Bioinformatics Software Engineer at BioReference Laboratories, Inc.

Posted in General Business 28 days ago.

This job brought to you by eQuest

Type: Full-Time
Location: Gaithersburg, Maryland





Job Description:

This is an exciting time to join our dynamic organization. OPKO Health is a diversified healthcare company that seeks to establish industry-leading positions in large, rapidly growing markets, including pharmaceuticals, diagnostics, and biologics. OPKO's diagnostics business includes BioReference Laboratories, the nation's third-largest and fastest growing clinical laboratory over the last 35 years, which provides diagnostic testing to physician offices, hospitals, and clinics, among others, and GeneDx, a rapidly growing genetics and genomics laboratory that applies cutting edge technologies to make efficient clinical diagnostic testing and interpretation available for individuals with rare and common genetic conditions. Come join our team and become part of something big, by making our patients and customers the highest priority.

GeneDx is a rapidly growing CAP and CLIA certified diagnostic genetic testing laboratory for molecular genetics. Our historic mission has been to make clinical diagnostic testing available for people with genetic conditions and their families. We apply cutting edge technologies that provide a wide array of molecular genetic diagnostic tests, including whole exome sequencing and next-generation sequencing panels. We specialize in genetic testing for rare hereditary disorders, but also test for common disorders. To learn more about GeneDx, please visit our website at www.genedx.com.

The Data Science group, a growing software development and research team, is seeking an experienced engineer to assist with the development of software related to the processing, analysis, and management of high-throughput clinical genomic data for the diagnosis of Mendelian disease. The desired individual will have prior experience in a similar setting and will work on multiple stages of the software development life cycle including clinical validation and release management. Additionally, they will help maintain appropriate documentation and assist as needed with software maintenance and support.

Qualifications include:


  • 2+ years professional software development experience

  • BS or MS in Computer Science, Bioinformatics, or a related field

  • Familiarity with genomic data and methods for processing next-generation sequencing (NGS) or other high-throughput genomic data (GATK, Samtools, etc.)

  • Proficiency in at least one major scripting language (Perl, Python, or Ruby) and Linux shell

  • Expertise using Git version control

  • Experience using JIRA or similar project tracking tools

  • Experience developing grid or cloud computing pipelines (SLURM, AWS, SGE, etc.) preferred

  • Experience validating software, including developing unit tests and automated regression testing; CAP/FDA/NY State validation experience is a plus

  • Demonstrated ability to work both independently and in a team environment


Benefits include:

  • Paid Time Off (PTO)

  • Health, dental, vision, life insurance, LT/ST disability plans

  • Flexible Spending Account (FSA)

  • Health Savings Account (HSA)

  • 401K retirement savings plan with company match

  • Employee Discounts

  • Regular performance appraisals

  • Many promotions from within

  • Business casual dress code